NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1005078

Scaffold Ga0208050_1005078


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1005078 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F091931Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10050781F091931N/ATNCIQIARFVLGRAHTFGEKMNYFAEKLIGLVLCTVFGFTVAVGAPDASGSPSDTIALAPLDVTPYLIEPPTTTSSTVYIDPYSSACEQFSALAVNLGWPVDQRTVLESVMFRESRCIPNIINKKDPNGGSRGLMQINGFWTPWLTDAGIITSAENLLQADVNLLAALAIYNYGVERHGYGWGPWSATK
Ga0208050_10050782F002794GGAGMSEGVAWNQGELSEETRRMVMEQMMTTRHDMAIFNLINEIADISTNPHASIIQRLKGMKNSLSLEEPMPLHDVTTLDLAIKALQAHS
Ga0208050_10050783F002421GGAGMKTCTICKETIAYPEITGKTHFVCDGRVPARKNAPFIEGMLASQSSADARWTKPEQNQVDAAILHVARTKGFFTSDDIWQHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGV
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