NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208050_1008868

Scaffold Ga0208050_1008868


Overview

Basic Information
Taxon OID3300020498 Open in IMG/M
Scaffold IDGa0208050_1008868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1162
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032962Metagenome / Metatranscriptome178Y
F056345Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0208050_10088681F056345AGGAMVFELNRQRGISLATGIERDLNQCQIRVGGKLVGYLPFGESPQILAIFEFPHDALTADEIASLEMQLEAIQGYPAKVQPPEQVSRTFVKAALE
Ga0208050_10088682F032962AGGAGMAALTVADTGLGATISGTSLITTQVVSIGEMTISVDSLDITSLDTTGFEALRPSDLRKNPEVDVVFNWLGAAIPITTAMIPTSEPYAGISVTVTLPGAGSFQGTAFVKEVKTPKLAKGEVMRGSYKLQFDGATDITFTPA
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