NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208084_1003914

Scaffold Ga0208084_1003914


Overview

Basic Information
Taxon OID3300020499 Open in IMG/M
Scaffold IDGa0208084_1003914 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 14SEP2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2172
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074796Metagenome / Metatranscriptome119Y
F077031Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208084_10039142F074796N/AMPENLPQEPEKIVDIASKAEYLKVDTNLGEVKLNSHNSVELQPDGTIFGTKIKVEENGNITPTLTLDTKKLRETKKNIDTKQLLDDAINDFWEGQE
Ga0208084_10039144F077031GAGMKEIPEFGFKIRITPKRSLIAILIASSLAFLTTKCGMSKQDVLKYYNELRKLIKWDLPDSIIDDIDNELNDKINNDPELLRQKIQTEVDSAIRNYELEEERNRVINMKNKNILEEINKDKYNKLQKLIVENAIYYEFADGTMGIRGAWVAPDPREIPLE
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