NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208463_1020226

Scaffold Ga0208463_1020226


Overview

Basic Information
Taxon OID3300020500 Open in IMG/M
Scaffold IDGa0208463_1020226 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 9JUL2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)755
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044492Metagenome154Y
F056507Metagenome / Metatranscriptome137Y
F078708Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208463_10202261F056507N/AMIQGTVKTEAQYRAIYLDSSSSLKDFSTDRRKYHKKYILNEVVEDEDS
Ga0208463_10202262F078708N/AMIVQTVHEILNPFDVEVKQLGYGVALFMIVGSIHSNPQFIVRFYNTGQLRTVDQNDLSVYGNPTAGEDLIPDPDVVSKLPPNARRNMDFLNKQKDK
Ga0208463_10202263F044492N/AMSSEEQVVVSINRQPSFTEIWHEGSVTYNETEYMFWLINPRGLDDQGREYEMEIRWWFKQVPKELRSMSEQIIKDFKENRHDSPNSTRDSKSI
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