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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020502 Open in IMG/M |
| Scaffold ID | Ga0208087_1000278 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9930 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (28.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (30.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029090 | Metagenome / Metatranscriptome | 189 | N |
| F029723 | Metagenome / Metatranscriptome | 187 | N |
| F032529 | Metagenome / Metatranscriptome | 179 | N |
| F036545 | Metagenome / Metatranscriptome | 169 | N |
| F058098 | Metagenome / Metatranscriptome | 135 | N |
| F058685 | Metagenome / Metatranscriptome | 134 | Y |
| F059665 | Metagenome / Metatranscriptome | 133 | N |
| F061798 | Metagenome / Metatranscriptome | 131 | N |
| F075668 | Metagenome / Metatranscriptome | 118 | N |
| F104447 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208087_10002781 | F036545 | N/A | MYGCFKNIPVRVPAYSYKMSNTTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDITQDWDSDFNLEQFKKLQERMTFFKHLHPNWRLGPREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS |
| Ga0208087_100027813 | F058098 | N/A | MSPFRKKVDRIILTPTVRKIIFNMSERRQFQIINKETTLLYGAVKLLAENNFKAVIDDIDTNCKELNQTNIQMYQKLNETLSCLKEIDPEWKIAAETRETFVPVVLIECLREGVSLIDTSDLEDLNFGIYNLVHQILGRIREFDPTWSINSSMRFEALK |
| Ga0208087_10002782 | F029723 | N/A | MTSYDSSNDRQKVLMTPMQLSVYWRKVAAEALKLLNDIHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQITMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESVLI |
| Ga0208087_10002783 | F061798 | GAG | MAEGRFIDLKSQDIKHIDEILLRYVSPNNRDSARRDLITRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSEIGNPSEGKTDS |
| Ga0208087_10002784 | F032529 | N/A | MAESRRLIDVTDTERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKVDTSCEVTSSTDTTSKNEAKK |
| Ga0208087_10002785 | F029090 | N/A | MKQKSKVATFTPYTKTECQRLRLIMPGVPSKKQEFIRLLDRINAPSYVDLMISLLCKAVNNIAPYEDDQYNTVRYRKIYDLLSIIKNKRPTWKLAYIAQDIEAFKQKANVLNKVYRGVSFFVRQEMKQENHFRLIYETINSIDLKKGYTKNFKWFKKLKNNLKFVYGRSPKWALHYQESALPDLGNLTENDFN |
| Ga0208087_10002786 | F104447 | AGGA | MTSTKTGYLCTTIHQLRLKNEFCDIINSIAVKKDFDSNARQYVRIHEILQEVKTINPDWRLTACAKYSWK |
| Ga0208087_10002787 | F075668 | N/A | MSYEYSVNDVRCLVMYTLNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSRSNKSCRKINRLNQFYE |
| Ga0208087_10002788 | F059665 | N/A | MSEEKENSKPRFSVRNRIRPSRGRWSDNDLLLFVQSLLNSVNTEENFQVNISVMEELFEAIKDFRERRPNWYFILEKIPAGSREDIGND |
| Ga0208087_10002789 | F058685 | AGGA | MKGRELKSYPCARFNCNQMIKKNRPKRKILLNPGVKSVRALIKNKCITRLAKQRSIIKNKKLNLLIKPCTTSRKSNSNPNGSSINQRVVVNYPFIPVRLHFLSKKSREWIKLASPMKAIKPSIATKLNILINKNVLANQITYLISLASYNMKVKSFIPDKLSVLINNSTLGDQITQSKVNYPFIPVEYIATNKSNIMKEKSILRIDRSTPVGAYSFQKRIQGTQIPVFPIPARTILW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |