NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208087_1002818

Scaffold Ga0208087_1002818


Overview

Basic Information
Taxon OID3300020502 Open in IMG/M
Scaffold IDGa0208087_1002818 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2835
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017447Metagenome / Metatranscriptome240Y
F032550Metagenome / Metatranscriptome179N
F033698Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0208087_10028182F017447N/AMNFGSRVVSMFNRVAPKISRGIGQAADIGRNIGQVVKHSRNIGSIANQISGGRLSQSSIGQKIQDAANKIESGANFISGNEDRAQQALSTISRKINA
Ga0208087_10028184F033698N/AMKFFRYKQVARLNFSGIDDELNDVDSSYYNTKQKLFDNDEINTKLLRFRINNLRDLKLSQNAKIILESLYLPSINDATLRMKHDPKIVLRFKNVSDSNCYDSSNDNNYPIIFAYSVQSRQQRVVSTNTTTLVGAINTYNNNIEIRNVYDNGITFFNPSPDKLYNFTISNTFTNNTVFEFEIIYEMDNGINIVPADDNTEFYKFQCSFIICDVDEEELISNDSNTVDLSKFKPHFPLKKSH
Ga0208087_10028186F032550N/AMIVEENLEGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKKFIH
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