NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208087_1006755

Scaffold Ga0208087_1006755


Overview

Basic Information
Taxon OID3300020502 Open in IMG/M
Scaffold IDGa0208087_1006755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016116Metagenome / Metatranscriptome249N
F021930Metagenome / Metatranscriptome216N
F022867Metagenome / Metatranscriptome212N
F088321Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0208087_10067551F016116N/AEELVKQFPKEQFAETYIEMWQTYRDTKAIQIYNLIEAKYPGSHNDEKRAGIWFEIATLFPHRLHELVKP
Ga0208087_10067552F022867N/AMELDLQIREQLTSLASNYYNRFWMKSYILSCMVIENAAQNIQLGIIGGKGVTTILEYNIEISRQIDGLSEILRHTNDITPDMVPWMTSILGHMVFLRNTIHGVDINDLVGLLRPLQLIKLGVTESRIGMEEAITNVDKKSLTEKWENELNLLH
Ga0208087_10067553F088321N/AMGERIELTPLEYLHGGLAASDKLRVQISNLIKQEFAKSQNLRARMSKIHSSIKVNQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0208087_10067554F021930N/AMSDQDLRRVTDLLKEVEFEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVIKSKKDTVDGIVEIEKSGNRPSFLAIAEKLAVQLSVIEHIISCQSLEQMGELMKIVTSEDYEKAREKIDLRFTK
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