Scaffold Ga0208088_1001283

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208088_1001283

Scaffold Ga0208088_1001283

Overview

Basic Information
Taxon OID	3300020505 Open in IMG/M
Scaffold ID	Ga0208088_1001283 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4144
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013988	Metagenome	266	Y
F047052	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208088_10012832	F013988	GAG	MAVYSITQKYLIDNYAVVQLLTDAEIELGASVVLAGVDATFNGTYTVRALPQYLYVGIDTEGDLLYDVNIPIANQVLVAKTASDVARTAASGTLTITQTCTWVTAANLEDWLGIGTATAADAAFLTVCASAASQFCWRRRMEAGYVDSLTTVPSQDVFLGTQMYGGALYRQRGSVDQYASFQNMGVTPVMGLNGMIRQLLGIDRPQVA
Ga0208088_10012835	F047052	AGGA	VKIKLTLTRGDKKETLITNLFAIAEWERLENRRVSDGRGIGASDMACWAYIMLGVKGETLPATWREWLKANPDVEIGVEDSTDPNPTDAATGDNSPNL

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