NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208088_1006713

Scaffold Ga0208088_1006713


Overview

Basic Information
Taxon OID3300020505 Open in IMG/M
Scaffold IDGa0208088_1006713 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 02APR2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1684
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049614Metagenome / Metatranscriptome146N
F074551Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0208088_10067133F074551AGGGGGMSQPQSLEDQILQQVLVIQALRLRIARMESIYTTPRTIRSTGQNGTTEDTRHQRDTIEEYGPITPRCVTDQEVDQAEDDGA
Ga0208088_10067134F049614GGAMTNSRMKGKNGELDACRALEKLFPFKWERTAQRYGKGKADIEAQCNWKIHVEVKRRKTGYSYVYGRLKSDNLIVSGSLLICRLSKLRTVMDDGVCLPNVAPRCAGLEDAMLQARTDARVGWLPIVLARQDDEEWLLAWREEVDTRLMEEVRTWLGDGDTKVV
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