NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000046

Scaffold Ga0208091_1000046


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000046 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33345
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F003408Metagenome / Metatranscriptome488Y
F014144Metagenome / Metatranscriptome265Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_100004620F003408AGAAGMPEIIQTFKSMHKTEDEKRKFLASLQGVNLNESSVEEGNSFEDIKRKALGIQASADDVVSLQGSYAAEAGFGIGAGLGYSRV
Ga0208091_100004623F000258GGAGGMTANYKLDAILEIRKFLWSKLVAAEIFDENEYFSDSINDKIVPIIPVQQVSEMDQFLSGKKHIVYDKIGTSYEDNWMVCCEQILFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARIVDGVGRFL
Ga0208091_10000465F014144AGGCGGVEKSRVVTCDICHKDIEVRWGIFANETLNRHKKAEHK
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