Scaffold Ga0208091

Basic Information
Taxon OID	3300020506 Open in IMG/M
Scaffold ID	Ga0208091_1000049 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020506 Open in IMG/M

Scaffold ID

Ga0208091_1000049 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32333
Total Scaffold Genes	73 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (65.75%)
Novel Protein Genes	14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Associated Families	14

Scaffold Components

Scaffold Length (bps)

32333

Total Scaffold Genes

73 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (65.75%)

Novel Protein Genes

14 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

11 (78.57%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001280	Metagenome / Metatranscriptome	732	Y
F004666	Metagenome / Metatranscriptome	428	Y
F008305	Metagenome / Metatranscriptome	335	Y
F008814	Metagenome / Metatranscriptome	327	Y
F020171	Metagenome / Metatranscriptome	225	Y
F028150	Metagenome / Metatranscriptome	192	Y
F038246	Metagenome	166	Y
F038669	Metagenome / Metatranscriptome	165	Y
F047650	Metagenome / Metatranscriptome	149	Y
F073565	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100004914	F000473	AGG	MSDKNFFKYGINQWTGEPNKPVFYTEEMKKAVHSIKRPSMLLMDIVKYPDFLALRLYEDNFLQFDGIKKEIVIDYVSKIKKIIESYGVRCELEGKQSANIM
Ga0208091_100004915	F000671	N/A	MEKILCYSCNKSKNNLVVRKSILLPINLFICETCIASKFEPRWVIILSGRQNGLDHIKEYILKKRYIGKEIAATEVIV
Ga0208091_100004921	F008814	N/A	LDKITVLEEIIKEIGEELYQKWYNALAIEDRTEEASKAMAQNSGETAFWVIQTFMSKFNEAAEDLKDK
Ga0208091_100004927	F073565	AGGAG	MSDGKDLTGFNEVKPVTNTSWNGEQYAADPASAFPSTDKSTQDGSGVGNNGK
Ga0208091_100004929	F001280	AGCAGG	MCIECGCESVGSETGIVSAPVIDVSRDGESGLTLDMTSTPEQTRQFINGK
Ga0208091_10000494	F028150	AGAAGG	MNMNWLKKWGFAALNENFTFLGFFVAWVVLEGSAKTVVGYVTIASVALWFLTIGIREKSEKDE
Ga0208091_100004949	F038246	N/A	MFAMSILDNLEIFIEKTEETEKCHYCQNKAKYSDIAKIDEKKYDVVSVCECHSFKGLSS
Ga0208091_100004957	F004666	AGG	MTTKREYLKSKGITVGRRGRFSGAAKVVLAEADKNGMKFTAEVPTKTK
Ga0208091_100004959	F038669	GGAGG	MSYKDTLLEPHLQKLVDLGESGTDIMHGHMKNLMYECETKLLDISELQDNPEYKYFSGRMDTLTEIYIMTYNLAFAISDRSKARG
Ga0208091_100004961	F008305	GAG	MLGYTYKDIQNFGHSLTWAIDTAKNQGDEQNYKQLLIVWDFFEGLLAEGYIDENTYYG
Ga0208091_100004962	F020171	AGGA	MPELFIDTVAEHITGAMQQEIAEQLFEDWSNKNLDEGAEYAEYEFMQYASPELKQEYNKFYSYIEGNEYYLC
Ga0208091_100004963	F000450	GGCGG	MGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHEWADGRDPLNKVRGMNNKALFTMDLTSFCEKYALERLLVV
Ga0208091_100004964	F047650	GGA	MAEDVSPVYYCDSCSVARASYLIKLLDGELAFCTHHYNKSKKALDEKAYEVIELNKKEDLPKLKEMAE
Ga0208091_100004966	F000311	GGA	MYFELTAPDRLSMERAYWDAQIIGLDPVAMSPLTFNIGTGSIEKVSKIRDKYNLIESYTSDYEPTGYTRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208091_1000049

Overview

Ecosystem & Geography

Associated Families

Sequences