Scaffold Ga0208091

Basic Information
Taxon OID	3300020506 Open in IMG/M
Scaffold ID	Ga0208091_1000200 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020506 Open in IMG/M

Scaffold ID

Ga0208091_1000200 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13172
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (76.32%)
Novel Protein Genes	15 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	14 (93.33%)
Associated Families	15

Scaffold Components

Scaffold Length (bps)

13172

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

29 (76.32%)

Novel Protein Genes

15 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

14 (93.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000450	Metagenome / Metatranscriptome	1126	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001019	Metagenome / Metatranscriptome	804	Y
F002071	Metagenome / Metatranscriptome	596	Y
F003663	Metagenome / Metatranscriptome	474	Y
F004666	Metagenome / Metatranscriptome	428	Y
F007470	Metagenome / Metatranscriptome	350	Y
F014250	Metagenome / Metatranscriptome	264	Y
F017995	Metagenome / Metatranscriptome	237	Y
F019324	Metagenome / Metatranscriptome	230	Y
F043940	Metagenome / Metatranscriptome	155	Y
F084151	Metagenome / Metatranscriptome	112	Y
F095357	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_100020010	F019324	GGA	MMLGYSEKDLDDMIYAIQSAVTTVNPDDDPFLHGNLWKAQEFLQGLWAEGYFD
Ga0208091_100020011	F000868	AGGA	MSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQFYADFRFAEMCESNYLKGRFNQFYDLTPDDEHYIEWDEEA
Ga0208091_100020013	F000450	AGGCGG	MGDRANFGFVQPNGNTVVLYGHWAGYQMLGRLADAVIAARPRWNDSSYATRIAISQLVADQWNMETGWGLYVNEIGDNEHKIAIIDWEQQTFSLHEEAPRNDLDNKVNGMNNNALFTMDLTAFCEKYALEQILTV
Ga0208091_100020015	F007470	AGGAG	MDYQDGFEDGVKFAREVIINNIRLWAETSDDGQILDDVADRLEFGKVDYDL
Ga0208091_100020016	F000311	GGA	MYFELTAPDRLSMERAYWDAQIIGLDPQAMSPLTFNIGTGSIEKVSKIRDKYNLTESYTSDYEPTGYIRR
Ga0208091_10002002	F095357	AGGCGG	MATSKEIKLGELLANSVEDHWFNPATLGHYLSQQPHWTIDRVMEVVLWIIEKNAGVYKDKAGHQEVSEGLVIAYKLDQLVDRIKQSNKFNHIRIP
Ga0208091_100020022	F043940	AGG	MRNRFRVEIYDENKANDLTIYSEQGVDKDYLTELVFSNRRRFFGNVRAYVFDTLKKKKTTALYLPMEIVNEGRPKQLTKYEIGLT
Ga0208091_100020024	F002071	AGGA	MATTLEVGQTYTTTQSGITGIIKAVDNHPSGTNRILLDVNGAERWTSAPAK
Ga0208091_100020026	F003663	GGGGG	MLSTAIEILDVTKNSIFHDEIMGLAGELHTRRNELSDETFAKYLFMYSAALSSKVADGVTKVLLTEQQMSDLLATMDEMDNLAETILEEDNNGK
Ga0208091_10002003	F004666	N/A	MNMITKGSITMATKREYLASKGITVGRRGRFSSAAMKAIQDAENQGIQFTAEKKTPKK
Ga0208091_100020031	F017995	AGGA	MAKVKQYLEIISAECDECGGAGFVFWGDEKNYDVEPCECVADVADELTVDWVNE
Ga0208091_100020032	F000447	AGG	MGYVEIFRLDNEGAGWVDLSEATPQELLDLEIGLFQEGAL
Ga0208091_100020036	F084151	AGGAG	MTIEYSIWQGSRLLSVGNTATDIKDIDKVIATLNDSEIAKKVKFAANVMKVEVK
Ga0208091_10002005	F001019	GGAGG	MNYGPTLEILEVEYSCSPGGVDTYEVYEIDHLPMDCPVYETESLTDAVKFCYNLGQDFIVRTVAAWHRNEEAYA
Ga0208091_10002008	F014250	AGAAG	MMYSDILDPRLQNLVDLGESGTDILHGELKNLMLEAETQFGYAQAYEDETEEAMDSMERKYWEGQLDALTHVYALTYQLAFAIAERKKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208091_1000200

Overview

Ecosystem & Geography

Associated Families

Sequences