NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1000932

Scaffold Ga0208091_1000932


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1000932 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4953
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000345Metagenome / Metatranscriptome1253Y
F032098Metagenome / Metatranscriptome181Y
F075870Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_100093211F032098GGAVENCEYPYHVFDETTPWCAWLQYEEICHQLDVPRQPSLTRFMRYRNYLKEVGVL
Ga0208091_100093214F075870GGAGGMIKPVKEEFPHSGFPIKIVHKDGKDLKDKKTCYFQTQEHAQKYIDRCKFKKKDYTLTIKEEKE
Ga0208091_10009324F000345GGAMTEEKPVVNQEELNKPNTLGDSLKEWWDSDASKQLQKENEEAKQRAVGKYFMLSEEDKLDMVQAICGVMCNAEKEGTSHRGLMDKLGIYPSGFWIDSLMDVHNALWSHYHDKRVEKDLKDDLDTLDDFIK
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