Scaffold Ga0208091_1002721

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208091_1002721

Scaffold Ga0208091_1002721

Overview

Basic Information
Taxon OID	3300020506 Open in IMG/M
Scaffold ID	Ga0208091_1002721 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2623
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007261	Metagenome / Metatranscriptome	354	Y
F011285	Metagenome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208091_10027212	F011285	N/A	MKYLFIFLLFVSCSKDISFDPTTTIVRQTIKFLYDESNKEKPVMEIQY
Ga0208091_10027215	F007261	AGGAG	MPRETDTIMSLPTYRQHWIHTRSYGHDIVIWSDTGKITIQCKWPDMERSNNNRVKRK

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