NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208091_1004110

Scaffold Ga0208091_1004110


Overview

Basic Information
Taxon OID3300020506 Open in IMG/M
Scaffold IDGa0208091_1004110 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2031
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004762Metagenome / Metatranscriptome424Y
F007466Metagenome350Y

Sequences

Protein IDFamilyRBSSequence
Ga0208091_10041102F004762AGGMAQSYEVLGMLIPNGGYVQVGDTYEGIQFIEAQPITKAQFEAGFAQYDAWKAEQDAKVAADKASVQAKLAALGLTADDLKALGL
Ga0208091_10041104F007466N/ASQVGSTAYTQEVTITALGALARLQKALTDGVLSHDFDGDQIETILREVLLSQWQQVPAALQWNTYDPTVQWQDAENNGLGEIDTPGNYELAQRSSDRIIIYDLVAALASSGLGYLYENASGLISYADSTHRTNYLATNGYTDLTANHALGQGITIKTRAGDVRNDITISYGENSTNQVSDTDLASIALYGDLSQIFTTTLRHLHDAEDQAAFYLALRAYPQPIFDSITYALTNPELDNGDRNALINIFMGQPIALNDLPTNMSSGTFQGFVEGWTFRASYNQLDVTLLMSPLAYSLQAMRWNDVPIVEAWNTVSPTLEWQYATIVS
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