NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208697_1004221

Scaffold Ga0208697_1004221


Overview

Basic Information
Taxon OID3300020507 Open in IMG/M
Scaffold IDGa0208697_1004221 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 12SEP2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2096
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.099444Long. (o)-89.404444Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029723Metagenome / Metatranscriptome187N
F036545Metagenome / Metatranscriptome169N
F061798Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0208697_10042212F061798N/AMAEGRFIDLKSQDIRHIDEILLRYVSPNNRDSARRDLVTRFELFKYQVVEDMIARLFPGEENIIRRCEAWCEAIVFQPIPLDLSQKDNGSENGNPPEGKTNS
Ga0208697_10042213F029723N/AMTSFDSSNDRQKVLMTPMQLSVYWRKVAAEALKLLNDIHLDEDHDSEDNLSAYKLFHEQLRELKRIDPVRPFNQITMGPTHPIVTSSCNCTLCDPSSEDIDSEDSTESILI
Ga0208697_10042214F036545N/AMSNTTDETLKHFLKNERKEKLYEPVRTMFSVINMIYFQAPQGEEKNKLLLLRLHEAKAEVLSLDPSWSMNRLIDLLITQMFDRIDNIDTTQNWDSDFNLEQFKKLQERMTFFKHLHPNWRLGSREVAEYSNCTCELCYQVRHPMKKDDLEEIKSLTIS
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