NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208086_1008387

Scaffold Ga0208086_1008387


Overview

Basic Information
Taxon OID3300020510 Open in IMG/M
Scaffold IDGa0208086_1008387 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 06JUL2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1782
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070923Metagenome122Y
F102439Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0208086_10083872F070923GGAVPGVVQVQSLPRRVAHACCTYYACGQEVTVSDAPAGMLAHLRGRLREEVGPRAVKAGRAFDEFVDAVCRCWNCEHWTKLARAQPESEMAAVRDAKVLIAKVREDVEAMWGDSPELQKLYGDVGTDAVESFARLWFESMANRTWMRQACREARKT
Ga0208086_10083873F102439N/AMGEVQRSLLSDDELPPAKGKKRRMPERLSPQLRKWLTQLARVGARITWTIELLYDPRKGGQGELRDRAKAGDHTLVLDTVREVEYRASQLAEDIEVFMTPPDRLPSEPGKPARVEAMAQRQAAKLHLFDG
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