NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207936_1041663

Scaffold Ga0207936_1041663


Overview

Basic Information
Taxon OID3300020512 Open in IMG/M
Scaffold IDGa0207936_1041663 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 19NOV2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Skeletonemataceae → Skeletonema → Skeletonema marinoi-dohrnii complex → Skeletonema marinoi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018862Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0207936_10416631F018862N/AAKQFLHRTRDPANPHMHRAIVCIICDRFIIGTETIHKLTKDDIWAHSGRLGVKSYEEYYHTTLKAKVKKQYQVHGLQDMLLSPRSRKYVDGYATCSVCYSGMQPQMASKRTPPKFAIANGFVIGSFPKEIKFFSKEGHRVTRKVEDDELTDTLKAMVAPLRPYGCLFAYSGGAQKSLRGNYQFFEM
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