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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020513 Open in IMG/M |
| Scaffold ID | Ga0208090_1000003 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 107649 |
| Total Scaffold Genes | 172 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 129 (75.00%) |
| Novel Protein Genes | 11 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Associated Families | 11 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000684 | Metagenome / Metatranscriptome | 938 | Y |
| F000808 | Metagenome / Metatranscriptome | 882 | Y |
| F000868 | Metagenome / Metatranscriptome | 853 | Y |
| F005745 | Metagenome / Metatranscriptome | 391 | Y |
| F013526 | Metagenome / Metatranscriptome | 270 | Y |
| F015988 | Metagenome / Metatranscriptome | 250 | Y |
| F021109 | Metagenome | 220 | Y |
| F034902 | Metagenome / Metatranscriptome | 173 | Y |
| F049499 | Metagenome | 146 | Y |
| F052590 | Metagenome / Metatranscriptome | 142 | Y |
| F068817 | Metagenome | 124 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208090_1000003113 | F052590 | AGGAG | MIVTNLEKMEKIVAKNKELSWLGWDVRDLKRSESGRTAVNGVRVDGVWYLQRIYSVTRNGWDIPNKYRG |
| Ga0208090_100000344 | F021109 | AGG | MDTLNRIRQEQQARYAIEHEKAMAKSPWIRESVKAFRNATPEQLAQIEAIVAKRAGK |
| Ga0208090_100000347 | F013526 | AGGAG | MKKNVLISFVTDAETDLQAIFALNRIMEKLPESDLEKFEAFEVLDAVQ |
| Ga0208090_100000355 | F000808 | GAGG | MEYTYSLTTSYDGELVNTLRVSDMMEAVDAWNKCVDYGNAKDYATYNLSDPTGKMYTKTFYANGEVVIK |
| Ga0208090_100000356 | F049499 | AGG | MKTMDYRMVDVLNADQLEVNDLIGVADEIVKVISIAPLSDGFSLVIENEFGEKDLIEILDDEQFELFILE |
| Ga0208090_100000360 | F000684 | AGGA | MTLGGYTYQIGDLFTTSKTGVTGRIEKFVPQSKNVTRVMLRLANGQQRFAMVKTY |
| Ga0208090_100000361 | F034902 | AGGA | MISTALAIQDATKEAIHDEDVMDMARSIYLSRHEVSEDEFIRMMYIYSAHLSAMTATLVTHACLTESQLNDMLETIKEMEALGKDIE |
| Ga0208090_100000364 | F000868 | AGGA | MSSFLENENQMVIDAIYHEIGEMLVEDWVNSNLDEGQMFADFRFAEMSDDNYIKGRFNLFYDLKPGDQYYLEWDEEA |
| Ga0208090_100000367 | F015988 | AGGA | MSNYLLEYMKIHLISLEQDLENIAQEMELLDPESKACKELDYEYNHMSGQILSTRHFIQVGEEHAGN |
| Ga0208090_100000368 | F005745 | AGGAG | MQAINELEPYLQKAVDAGISGLDIMHGHLKTLMLEAERELEEASRIEIENDYSDAIESMERKYWEGQCDALSHLYALTYQLSFAIAERDGQ |
| Ga0208090_100000378 | F068817 | GAG | MSDLDEFMKDPWKRFNEMRKTPHECDYDYRIDSSGTMFFEICKLCLDTKGVVEMNNNEELND |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |