NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208090_1001148

Scaffold Ga0208090_1001148


Overview

Basic Information
Taxon OID3300020513 Open in IMG/M
Scaffold IDGa0208090_1001148 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4904
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F005348Metagenome / Metatranscriptome403Y
F084217Metagenome / Metatranscriptome112N
F100416Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208090_100114810F000808AGGAMDKEYTYSLTTSYDGELINTLRVSDMLTAVDAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0208090_10011484F084217AGGMSDYLNYLDEVYNDLVSEYGEGINLAYHEANKSEM
Ga0208090_10011486F005348AGGMINDVMRFDCNECGGVGLLFWGDNLDYSIEKCECENFALGTLFTSGEAD
Ga0208090_10011489F100416AGAAGGMGKVKEAVMDILEHELCYGYGWLYSGNGIDFDSEACECNPYAISADEIMELKGL
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