NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208090_1017409

Scaffold Ga0208090_1017409


Overview

Basic Information
Taxon OID3300020513 Open in IMG/M
Scaffold IDGa0208090_1017409 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004995Metagenome / Metatranscriptome415Y

Sequences

Protein IDFamilyRBSSequence
Ga0208090_10174092F004995N/ANNLLLNKVVVSYDKIKNKFLYKRTLPITTTNFKMYLKIINSEDFLGFFKSDREQLILLPYFNNVYSNSIVNISGDEAIIIKISGDCILAGNTVDNFGDIDYQPSNIIFMKPIDVASNGLLKYNNEDGGDSFQYRLANIEQITYFELTVHNQDDEFIPSFSDYILLLQFIRHSTKEDKTHTILETMLDYIKQIYLIISQIVFPPSY
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