NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208202_1002073

Scaffold Ga0208202_1002073


Overview

Basic Information
Taxon OID3300020514 Open in IMG/M
Scaffold IDGa0208202_1002073 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27AUG2008 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3638
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031407Metagenome / Metatranscriptome182N
F034112Metagenome / Metatranscriptome175N
F073276Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0208202_10020733F073276N/AMSLVQLANIFEAATDAVNGLNGFSFGWASDRVRSQIYTEEGENSTNIFPRVFFAVPTLTNNPVTRRDTYQVTLFFDDLLGYDENGDVDTTLQITKWSNLIAFAEKFILELGTTKTTNSIPDQVNLVLDSFTSIQRLITVQATFSISIKSEC
Ga0208202_10020735F034112AGGAMVIFNIGNKQIKYNYPETAEDITLEQYIYFAKYLLPEHPKTELQAIQYMNDRDALYKKILPYAKKLKVKVTGFEQLYVILKLEYTLEQEEVKDNVRRFLPPLISQWRSNDEQLTQRLEIMDEVWEAKERYPYMAKVVNYFTGIPLEACFGKVADSLELKYLVYIYGKIMNAINTPAETKYKQLYDFNGKVYTLPERLMEKSTLLEFTMAAQYDKAMNQVKNGDPQGLLNIMAVLLKPLGEDYSDELFEQNKVDFLQMSLQTSYEVAFFLTKLSEKYTLDLQTSMLQRAMENLN
Ga0208202_10020736F031407N/AMTDKEKAIIIIDLIEKVTQEIIDKPMQRKRLLQMRGHLEKAVKLTGNGIKREWSRPPSLPIVSHAKAEPIPFIPTTTETNGDLLADNIPVITKKARKR
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