Scaffold Ga0208234

Basic Information
Taxon OID	3300020515 Open in IMG/M
Scaffold ID	Ga0208234_1001820 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020515 Open in IMG/M

Scaffold ID

Ga0208234_1001820 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3361
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (36.36%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

3361

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (36.36%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017485	Metagenome	240	Y
F027416	Metagenome	194	N
F050949	Metagenome	144	N
F054034	Metagenome	140	N
F084236	Metagenome / Metatranscriptome	112	Y
F092047	Metagenome / Metatranscriptome	107	N
F103248	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_100182010	F103248	N/A	MLTIKNIHKIINITSPLPYKWYINTVDELPDDLYGFSVLIGNIQEIFYLNRESQYMSGRNEPVYRLYKNFDQSKINRWLSLHQISPYFIKQAINDMLNK
Ga0208234_10018203	F017485	N/A	MNNELKTKDILEGITFILMIVATIGMFCLLYEVKELRELTKSATNFRTIRK
Ga0208234_10018204	F054034	GGA	MLTIRTFKKLEGLVLMDGLNVESIFEFNERYSIWLSDGTNIEIDREPHWKSSTVTYYKMYIAGGTSAMTEFIMIQTINTLDRMAKHLIYIHDKYKTK
Ga0208234_10018205	F084236	GAG	MLTINNQYKIVAESFVVSKNGLNEHWTVDDITETPYVYDIRVLRKLGIFDTMERTIRVNREKNKLEMYSVQITAGGHIIDKDQIRVGNIQTADAMLNELKTIMEFI
Ga0208234_10018206	F027416	GGA	MLTIENIHKLEGCKVAAACMVWKVLRIKELDYNSENIYSIVLRTYPDNIHRIHLYLDRELKDGQYYLTSSKSDIMRAVERQDMVDVYNFLRLIKKEINRALC
Ga0208234_10018208	F050949	AGGA	MLTIKNRGRLISDSFYDKMGMYWVVDKIIDDTNEYLILIENRKGPKEIFALNKQNSYGIGYEFGISAGGPGMQRMYKLKTYIPIETISDKRLLIKRMTEMIDNSYDI
Ga0208234_10018209	F092047	N/A	MLTLKNFTNIEGMEFQLSSGNKFLIGIAKDEGEHYTFGVFPLAVNGVAIIKDVIVYKLYKDILYGGDYYHGYWLESPKMKRIVKVKPENLTLKNFILELHIQTGMIC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208234_1001820

Overview

Ecosystem & Geography

Associated Families

Sequences