Scaffold Ga0208234_1006878

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208234_1006878

Scaffold Ga0208234_1006878

Overview

Basic Information
Taxon OID	3300020515 Open in IMG/M
Scaffold ID	Ga0208234_1006878 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 27SEP2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1495
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064189	Metagenome	129	Y
F074795	Metagenome	119	Y
F104766	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208234_10068782	F064189	GAGG	MAKNFRDLNTVEACDMNREQAIIYVLNFLNSRMSAMSNAQRNKVKELIGLHEISAPELVNKYIELVRDNA
Ga0208234_10068783	F104766	GAGG	MEWISFFERQPEDGQGIWYYGEHIGVWAGEYSYSPNDPFSPHLIFCHESPGLVDRMDAPWWMPDDGVMSRPIKPAKDYPEDYPNG
Ga0208234_10068785	F074795	AGGAG	MTKKEAMATILKVLRSMMAVKCKPWKEEALTLAEEHGITVKDLIEEWNDMANRV

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