NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207935_1004710

Scaffold Ga0207935_1004710


Overview

Basic Information
Taxon OID3300020516 Open in IMG/M
Scaffold IDGa0207935_1004710 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2496
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F014823Metagenome / Metatranscriptome259N
F016116Metagenome / Metatranscriptome249N
F021930Metagenome / Metatranscriptome216N
F083681Metagenome / Metatranscriptome112N
F088321Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0207935_10047101F083681N/APTLKMNEQEGIEELGRLKRVASIRKDMCKVIQLLGHRVKILKLQLAQLPSEEKNLIRFQLDNALDETIKVVSKISHNFQKEEKKLILELSHQ
Ga0207935_10047102F013499N/AMSEALKDIRTTVSGIKGLVMMLQAYQRDLVSKGEPDPSEGSLETARSAINQLKEKIETIVGPEEPTGAEGFEVEVHESEDQSQTE
Ga0207935_10047103F016116N/AMVEKLAKHERLALYNLTEKEIDQLEEELVKQFPKEQFAETYIEMWQIYRDTKAIQIYSLIEAKYPGSHNEEKRAVIWFEIATLFPHRLHELVKNLREWN
Ga0207935_10047105F088321N/AMGERIELTPLEYLHGGLAASDKLRAQISNLIKQEFAKSQNLRARMSKIHSSIKINQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0207935_10047106F021930N/AMSDQDLRRVTDLLKEVELEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRFTK
Ga0207935_10047107F014823N/AMSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLASVEQTLSTSMRRVHRKVIELRRENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVHRQARSEKEIENLQSTAVAEKKVDLPE
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