NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207935_1005371

Scaffold Ga0207935_1005371


Overview

Basic Information
Taxon OID3300020516 Open in IMG/M
Scaffold IDGa0207935_1005371 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 30AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2266
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057099Metagenome / Metatranscriptome136N
F062460Metagenome / Metatranscriptome130N
F065414Metagenome / Metatranscriptome127N
F093242Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0207935_10053713F062460N/AMNLEKSIIEAVTTAVKEIRQESCIKKQVKSLMKIYDAIVVKDNETSTESSLKTTRKRKRSISHE
Ga0207935_10053715F093242N/AVEYSNSEKDKIMNIIQDSMNRIDTNTNYNYNYENFLRIYAAMRKLKTKEPGLKFKVSKIPTNEDNHFFKKRNEN
Ga0207935_10053716F065414N/AMSEPAKMSEPEVVINLNNLEELNIQRAKGLRKELLYIIRNRAYRQLYSLLNKVAASKKEKYNKERFKIIFKVLKRIKAMEPENHLNLASYIVSRSGV
Ga0207935_10053717F057099N/AARKDNKPLFRMKILRKDWELISKIAWNILNLKLEDSKKTLNLESSIDAFKLLGILNTPVFVHILISSLCRTINLIRPETREMDIVRIANRALLIMREIKKRRPNWKFQFCPNNLANSKETLKKQKSNQKYFSKISRLKNFLIINQILSQIEVDKSYEENSHLFEALKGTKREGQNSKLKWLFYHKIPELPDLIEYK
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