NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208721_1011553

Scaffold Ga0208721_1011553


Overview

Basic Information
Taxon OID3300020518 Open in IMG/M
Scaffold IDGa0208721_1011553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1190
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028720Metagenome / Metatranscriptome190N
F065451Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208721_10115531F028720N/AMATKRKGFWKDYSKQVVEMTSEKNKKDPMDAFWCLNKALLDLYKVMENKGGPKEVNRYSGYVLHFVVLLDTIVLNYGDFDLNYAMDDPNAFDPLCKSTLLSVASSLSGIARTLWVEKRIHNRGDPVRDEWESLEYNFSGETCHMLKLALTRVLRYIKSNTDLSL
Ga0208721_10115532F065451N/AGLPYLSSIIIRIRSFLFHPDFFLILSLIFLTFRLNILKKMDTEECVFTDFWKSYRLLVQNKLAPWKDDHALFLLSELSHAVLATLNPTPYDKDEVIENLLAGIVLVAYQKRGDFVLKLEFDRFEPRNELQRFWAPYINSEDPPRPAVQITQELLWLQARHVKNTEEFGTPYVCDHGYDKILHRVLKDCLKLLSSLTDLSIRTIAFRQMEKDV
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