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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020519 Open in IMG/M |
| Scaffold ID | Ga0208223_1000001 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 180235 |
| Total Scaffold Genes | 224 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 161 (71.88%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001360 | Metagenome / Metatranscriptome | 714 | Y |
| F007583 | Metagenome / Metatranscriptome | 348 | Y |
| F015212 | Metagenome / Metatranscriptome | 256 | Y |
| F077294 | Metagenome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208223_1000001158 | F001360 | AGGAG | MSLAKFRKVGTKTGAGRFVVSEGIAPSAYILPSVALPTWYADSEDDRFEIVIPKGTILSVVTDSSGDSRFVPANGTGSSVTWGDTISGWNPLAAATPVAGASGDTQAVAARSVPVGCAQYDLYRPFDKGTSQGAGFIVRGYVEYPMVTGVNADLTAGSLVAPDFMGRPRLLSQADAASYPHLIVGKVIEVEKFATNFDDGLLSYMQLPSDPGALKTVYELTRSGSFSGKLGIRANLDVTNVIGAFRVNLTL |
| Ga0208223_1000001162 | F015212 | AGGA | MATNYPNQLDVLINPTATDKLNSNTVPHHQQHANLNDAVEAVQTVLGLAPAGSHLTVKDRIIAVESNISSINGLGDVTISNVGTKDVLIYDGSQWVNKSVESLSNNSAELNINGGNF |
| Ga0208223_100000155 | F007583 | AGGA | MSNINESGSAAQKSASGVANVRFGVYNQPTPIAGKSIKDAREQFGKLWGIPTDAVAYKGKDKLDENYVIQPGDNVEFHRRAGEKG |
| Ga0208223_100000190 | F077294 | AGGTGG | MNEYPSDYPRHGFHMCHGCGSMAPHHTQKELPDNGWVFNINNFGYYAGFTDPIGDPEQIVRLCHDCIVKFLDTFPLLSVLVGKGGHSPNGPNEKPCCQYAWKAESIGSSTITYLASDDAESWEIM |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |