NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1000016

Scaffold Ga0208223_1000016


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1000016 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45702
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (15.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007860Metagenome / Metatranscriptome343Y
F038989Metagenome / Metatranscriptome164Y
F076816Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0208223_100001611F038989N/AMGDKDKSVKTTAEQEKITADKLAFNNKAVEAIAKNAATRDAERIKNKEIASASYARRRANRDSGSSGRTRLVGLSTFNRPFQGDGLSS
Ga0208223_100001619F007860AGGAMKTNILASLYFISGFLTSMFMMFQGQKNYIVLGGITLFFYLTFTLTQAIEELDS
Ga0208223_10000165F076816N/AMIGKKFGSIYSLMNDGLTVKDGRLINNRPDGKNGIEKAAELRKAMKRAEKIEMYSEAVALGDMKAEMREEGMEVMMSFKGRK
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