NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1000019

Scaffold Ga0208223_1000019


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1000019 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42350
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (76.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F000450Metagenome / Metatranscriptome1126Y
F001562Metagenome / Metatranscriptome670Y
F002489Metagenome / Metatranscriptome554Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10000191F000258GGAGGMTANYKLDAILEIRKFLWSKLVAAEIFDDNEYFSDSINDKIVPIVPVQQVSEMDQFLSGKKHIVYDKIGTSYEENWMVCCEQILFTIYSPDVSEINEIRNFMIDEFRRVDESARDVNRFASLSNKFKFFSIFVADISPTEPSEEMQGLMSSDVILEVKYARMVDGVGRFL
Ga0208223_100001936F002489AGGMNEEKEPSQNLEDNLPMVNYIMLHRIYDLLVLISKSVAEPEEVQKMIDYHEKGFLLGPVPSFTSVDSNEDV
Ga0208223_100001947F001562GAGGMKSQLEKDLDIKDSFDQMLDDSYPDVKIGYSTFTASEILFNCDPIAYQIGLVEHEDYMREEGHID
Ga0208223_100001969F000450GGCGGMGDRANFGFVQPNGQTIVLYGHWAGHQMLGKLADAVIAARPRWNDSSYATRIAISNIIADQWNMETGWGLYVNEIGDNEHKIAIIDWDQQTFSLHDWADGRDPLNKVRGMNNKAIFTMDLTSFCEKYALERLLVV
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