Scaffold Ga0208223

Basic Information
Taxon OID	3300020519 Open in IMG/M
Scaffold ID	Ga0208223_1003089 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020519 Open in IMG/M

Scaffold ID

Ga0208223_1003089 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3273
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3273

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001106	Metagenome / Metatranscriptome	776	Y
F009961	Metagenome / Metatranscriptome	310	Y
F012456	Metagenome / Metatranscriptome	280	Y
F057380	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10030891	F009961	GGAGG	MTVDYKIDAMFELRKFLWAQLKLTGMFNQNDYYSDNLGAEIIPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDVTEIYEMRNLMTDLFRRMDESAKDVNASKTSNKLIFHSIHITETSP
Ga0208223_10030892	F012456	GGAG	LDSSVALLQASSGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTSNAEFKNLFKTTIFNQIEKDFGQYVDAQARTKPKSLHHVYEWNKTGNPSFRLFDLYLIDTGGLSFRIGRDFKLSKSAVPSKNKKQKRKYVFSNKATVMEEGMPVVIRPKSAERLVFELDGATVFMPKGTSVTVKRPGGRAATNQFALTYGRFFGGQLVNSSIRSSGFQRIFNAKIAKALNVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL
Ga0208223_10030894	F057380	N/A	MAEIYVNSNSPIRTKIYWEGELITPSSVVTAKIYDVTKDPTNVILPTTILLTINATAVETDIGTYQIVLPFSYSSYPRNFKIVWQYTVSGGAVGTHTTYANVVSPYININEQIDDLNFGADPSDPNYKTYGDLQAAERYARKIVEDFTNQDFYLYSGEESIYGDDSDTLPLPAKLNKIYKIYSNDILLVDNLATPKVNNWLYDPIVSETGFGVRVNRTNLLDNTVYVANGLVPPSINDTFNGVFSKNIKYKIVGQFGWESVPDKVQLATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNASASKGTGNLYVDQLLNPYVITQMVLI
Ga0208223_10030895	F001106	AGGAG	MSFETLKVAELRKIAEDFAVDTDGIKSKADIVAALAEEGVTWSVYQKTIKDIEDSTDEFSENAEEILPRFDPNAQPEDTVLVRMTRENFRYDINGFTFTREHPFIAMTEDNAQEIFDKEEGFRLATPKEVQEYYN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208223_1003089

Overview

Ecosystem & Geography

Associated Families

Sequences