NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208223_1007502

Scaffold Ga0208223_1007502


Overview

Basic Information
Taxon OID3300020519 Open in IMG/M
Scaffold IDGa0208223_1007502 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1856
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005382Metagenome / Metatranscriptome402Y
F013505Metagenome / Metatranscriptome270Y
F085396Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0208223_10075023F005382N/AMAPPMTKTDKIKSFIFNAGSSIVNVRFVKADGSVRSLCFNPRDTKEIKGTGTAVKKPSIIRCRDFTIARNVGEGAWRSFDCERVLSIKANGQTLTF
Ga0208223_10075024F085396N/AMTCTPFLTRSQRAISRMVKDAGYSLSSYSRDDRSAARSKLLALVHKAPQHAPASQPNKRTKAFFLTLADSMQDDIWRFL
Ga0208223_10075026F013505N/AMKHYPSYEARLEADRQAQHSGYGIRPFLCADGSTKWEAYGWERITEFQLHDTSYGLFDQKWEAEQYFNSIIHG
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