Scaffold Ga0208223_1011573

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208223_1011573

Scaffold Ga0208223_1011573

Overview

Basic Information
Taxon OID	3300020519 Open in IMG/M
Scaffold ID	Ga0208223_1011573 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 07OCT2009 deep hole epilimnion ns (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1379
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008132	Metagenome / Metatranscriptome	338	Y
F014142	Metagenome / Metatranscriptome	265	Y
F084151	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208223_10115731	F008132	GAGG	MMTKWDTIQADVADAYRHLDDVEEIEQEDEEDFFGFAKAIEIDHLTDEQL
Ga0208223_10115732	F084151	AGAAG	MTIEYSLWQGSRLLSIGNTATSIKDIDKVVAELNSSDIAKKVKFSANVMKVEVK
Ga0208223_10115733	F014142	AGGAG	MNSLNVSVVVEPTHPMSSSNTKDKNIFRLANGNYISRMAYVYMVADKGLLSHRYLSPNESKWVMSNRKDN

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