NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208482_1011485

Scaffold Ga0208482_1011485


Overview

Basic Information
Taxon OID3300020521 Open in IMG/M
Scaffold IDGa0208482_1011485 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26SEP2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1297
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025657Metagenome / Metatranscriptome200N
F067403Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0208482_10114851F067403N/AMLVFIKLTVIFQLTKIQNFLSEYALELASTDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINEYTTPFRATKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDSTRVHTPAAGSIPNNVLETHYVLGSTRATVVPSSGKTMSFFYKPVYNTSIETIADGLASIIPHMSSVMCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLFKALIIEWKFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQMENLKQGFRFITDPIDLALLMFEHDLLMAEIKSIRQDILTPLTNPLSLIDLNNLDEASGTNPTLLKHESLSGFYLQVERRLGYIIPAQG
Ga0208482_10114852F025657N/AILRAQNAANSCLIKTLKAAAVILKVEKIIGLNCKEKRKGYPDHMIDSVHLKQKFYLKAAENLCKIIAEKSSSC
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