NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208482_1022689

Scaffold Ga0208482_1022689


Overview

Basic Information
Taxon OID3300020521 Open in IMG/M
Scaffold IDGa0208482_1022689 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26SEP2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)852
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032550Metagenome / Metatranscriptome179N
F054611Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0208482_10226891F032550N/AMIVEENLEGWNNIPVKSKEVIYPQSKDDKAPKNYFLGIFCGSRGSGKSYLFTKLLKTLEEKKAYLDDKLVPQRIILISSTANSDSNLIFKTLKNLDWDNDVIDDYNDDLLIMKMDELKTDLNHSKDYKLYKEAWKKFIHCKDIDELDDDE
Ga0208482_10226892F054611N/AMVDIDEEKLQNLMELVMKEHPDLDPYVVWIISANFLLNEQGVYGDEKLAEQLREQRNKESGFNIRVV
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