Scaffold Ga0208858

Basic Information
Taxon OID	3300020524 Open in IMG/M
Scaffold ID	Ga0208858_1000203 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020524 Open in IMG/M

Scaffold ID

Ga0208858_1000203 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12852
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

12852

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (72.73%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Mendota, Madison, Wisconsin, USA

Coordinates

Lat. (^o)

43.098333

Long. (^o)

-89.405278

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F003134	Metagenome / Metatranscriptome	505	Y
F025683	Metagenome / Metatranscriptome	200	Y
F105039	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208858_10002031	F003134	N/A	RVSLCDSLMTQWSPVWLVEIDGVAYTDAVLANLTISSGRTNIYEQAQAGYVNLQLLDVNQATIPVSINSSISVQVQDTSATYVPIFGGTVVDIGLEVRDVGSTMFTQTYSITALGALSRLPKALTNGVLSRDFDGDQIWEILSDLLLNTWAEVPAAETWADYDPTTTWATAENVGLGEIDRPGDYDLAARGNNRTDVYSLVSALATSGLGYIYEDAFGRISYASSTHRSLYLSNNGYVQLTANQARAAGLRVETRAGDVRNNVTIQYGNQSQHEKSASDADSILQYGTLSQIITTTLHDAADATQQANFYLDLRKTPQAIFSEITFDLTNPELDDSDRDNLIGVFMGEALAINDLPANMGGIFQGFVEGWSFQASYNQLSITLNISPVAYSLQALQWDEISAAFTWSGVSPTLDWARATIVV
Ga0208858_100020310	F000403	AGG	MSDYMEMIDLKTMTGKLVCNGELVAEYKVEQCDKCSQITKFDSFGYQKGYDKHEKIIWFCGGCR
Ga0208858_100020311	F105039	N/A	MVAAVKITSDKGDLLESKGHYNETSFMTYLAELAESIGSEWAVAKYFGLPFDPFEDKGKVKADVGAAIEVRWTKYELGQLIVYEYDRPNDIAVLVTGTAPNYYIAGWIPVTMAQKPRYRHSKQPTWWVTQINLQPIENLRKSNYGTSSI
Ga0208858_10002037	F025683	GGAG	MVLDLLDPETLGRLVGVIFLMVLGGAAGYAKGFKEGKREGMARRKAISRHVSNKVAD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208858_1000203

Overview

Ecosystem & Geography

Associated Families

Sequences