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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020524 Open in IMG/M |
| Scaffold ID | Ga0208858_1000334 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 16NOV2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9390 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (64.29%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001731 | Metagenome | 644 | Y |
| F002433 | Metagenome / Metatranscriptome | 559 | Y |
| F047681 | Metagenome | 149 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208858_100033414 | F002433 | N/A | MSVGEWTAVGGLVIALLTAIYSSMRFMVKSIMRELMPNGGNSIKDQVSRIEERLNQLILELALKK |
| Ga0208858_10003343 | F047681 | AGAAGG | MPQIVTAAELRQILGVSVSLYSNAYLEQMIDSAELTILPLLTGYQSAVTEVFVENSIAYYGTQRVNYFVPGQDVVITGCGVYDATVTVTDDRIAPMVFTSATGQADSTYTIPIIPSGLACIDGATAGDLYSGVAPIKSAILVVAVEVFQSVTAPGNQIMSDQFQPSPFVLGRSLTNRIVGLLGPFLEVETLCL |
| Ga0208858_10003349 | F001731 | AGG | MTIFNPVWRVTIGGVQYQTAILSNLTITSGRTNIYEQAQAGYTNIELINLDQSAVVIEINDSLTIELQDSTATFIPIFGGSVVDVAISVAELGSVAYAQRVKIIALGALARLPKALTDGTLVQDFDGDQILHILQDLLLNNWSEVPAALQWNTYDPTETWANAQNVGLGEIDTPGNYELAQRSSSRIDIYSLVSALATSGLGYIYEDAQGRISYADSTHRSIYLAANGYVDLSANDAQGAGLSIQQRAGDVRNTITLKYNTNSNNEVDATSAESVSLYGQLAQIFTTTVKHMADAQDQADFYLTLRAFPQYNFNQITYQLTNPEIDDSDRDSLINVFMGMPVSISNMPLNMSAGNYLGFVEGWTFQAAYNEISVSLNLSPIAFSLQAMKWEDVGVAETWNTILNTLDWEHALVVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |