NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208085_1005536

Scaffold Ga0208085_1005536


Overview

Basic Information
Taxon OID3300020526 Open in IMG/M
Scaffold IDGa0208085_1005536 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21JUN2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2270
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F053106Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0208085_10055363F053106GGAGMAKYYVKSGTLEVILSQPNALEAAICGLLLTNKFDTIDEHFYVDERGYRDYVSADPKTNVIATKSIVRAAGWELSREDE
Ga0208085_10055365F000325AGGAGMKVANGNDKLGKGCLVVSRPVGDTCPPTCVYLGDGCYAEQTEKMYPNVRPAGMQNLITEKNRIRAMILEAIRKQKSIRWHERGDWFLNGELDLDYVANVTWACESILADGISLPDMWFYTHIYDSRLVSFEKYMNVYASVHNDDDMIAAMAQGFKLFAWCDSDEKIAKKRPKRKAAAEVWRKSLPKLVVLNDVKFITCPEIRRGRGVVTCTPTEGSVDCNLCVKGLANVLFPSH
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