Scaffold Ga0208232_1000015

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208232_1000015

Scaffold Ga0208232_1000015

Overview

Basic Information
Taxon OID	3300020527 Open in IMG/M
Scaffold ID	Ga0208232_1000015 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	56484
Total Scaffold Genes	86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (22.09%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Algavirales → Phycodnaviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F093376	Metagenome	106	N
F094908	Metagenome	105	N
F096897	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208232_100001515	F096897	AGG	MSFTVIDGELAVLRDGEIEYVFERDSFSRAAYNYMIRWIQDKKSPEDDPGMMWFEAEKAWDSLSPEIQGTLVSISNKEKQQASDIRDGLLATLHGYQGLKTIKDAYAECISGCFSQW
Ga0208232_100001533	F094908	GGA	MNDPAFRRNFTGCLGDYDITKCRRIIHPKGTLYTPISDEEGHFMAYEFIGSKIIRVFDPAHPMSRYSGHLDRDLISKLSGRQVVVCRDHPQKHEEDTFCATWTLVWLRPDLRHLTKSN
Ga0208232_100001553	F093376	N/A	MPSSVLQPGLLMVEEGMYFGPKNTNYEVMVMTDDALRSQMTSRNNKYYADKPYDFPELYIDKPVNKFMTWDPTSTYAMYQSASYAKRYPTDK

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