NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1005230

Scaffold Ga0208232_1005230


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1005230 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2150
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029757Metagenome187N
F047683Metagenome149N
F054874Metagenome / Metatranscriptome139Y
F081348Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10052301F081348GGAGMFEKVPYGVKVRVRGNEKDGFIAEYALHTTRFTPFFDDWSLISHYTHTPYTKQDTFPTFELAKEAAMAQYDSWIGFYDRAEETKRI
Ga0208232_10052304F054874GGAGMPNENKGGTFAPADMDLLKRALRYYKDMLVSTEESERNASAELMKVANLLHRIGRIA
Ga0208232_10052306F047683AGGAMTLTVEQIEFTYGVPAFATGQNYYPVLAYWIPIAKLEDVRAAYRAAGTTIRVRYRGPRTVSIGREMIRTDKTTYLRSRHRAMQDCLIADATHFTVYDYTAR
Ga0208232_10052307F029757AGGAMLTLSDINVLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQIEQQQVEQARNFDEFVARVEETMQIVEGATRERAIEIIADAEGISEDEFDFYGLEILEYRFELKFGSISRWLSE
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