NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208232_1005640

Scaffold Ga0208232_1005640


Overview

Basic Information
Taxon OID3300020527 Open in IMG/M
Scaffold IDGa0208232_1005640 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2064
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002303Metagenome / Metatranscriptome573Y
F007751Metagenome / Metatranscriptome345Y
F010836Metagenome / Metatranscriptome298Y
F011075Metagenome / Metatranscriptome295Y
F105160Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0208232_10056401F105160N/AMTIEEQMDIELILTEASAWGLRIEVEQSAQQFINEGHKVVDAYQYAYEDWV
Ga0208232_10056403F002303N/AMDIREKCYERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYAGGGFVEAVVANNLYLALSRADSDCRNNIYLLAMCNANCHLNDF
Ga0208232_10056405F007751N/AMNQIEELKSVIGKDVSENRSPTCRARLVSVGKLNCIFESVPSLYGPAPKKEFVGVKYKVPNWIAWNSFFY
Ga0208232_10056406F010836N/AMATSNFHNVNASAIFAVPLEHEFDYEDLVCNLESELSNNPDYVDYGKTDKNELRSFPSRTLGSIRKYHQYKDFYVEVCVTPVIRSGYYSGVNLDWNVDYTINGDIYDIDELENGIGYNTALPISKIKVYSSLAEKKAEKLKNDIVEKLEAIYNNYSDRYGVTAVFSNGETIYHKL
Ga0208232_10056408F011075N/AHLGIIVGSHLNDAMIEISINPKLAKQRMKFVKALTFFNEDLTKGVTDEYCSWLWDELFENQRWGGPYVKGTNYETK
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