NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208224_1006157

Scaffold Ga0208224_1006157


Overview

Basic Information
Taxon OID3300020528 Open in IMG/M
Scaffold IDGa0208224_1006157 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26OCT2009 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1977
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020907Metagenome / Metatranscriptome221Y
F072267Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0208224_10061571F072267GAGMTEPTLKIGPSGYKLNPEKLKGAPQSILPYVCGAFYYTEDFEYFDVIKPYLDIPEKPKTLEEISQEFDEKIDKRIESIKHKFAELKCHQEYLYNQRFNRIIEDFEYAKKNGQFPLKPKFTIGTTLSANSNITSTFVIKQGNKHEGYYTIGNGYLRF
Ga0208224_10061572F020907GGAMTDEQLLNSLQGTMAKIDPYSVKKEAIDEYLIDTIEERLTRIEDKVDLLITQLKIEFYKKND
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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