NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208235_1000590

Scaffold Ga0208235_1000590


Overview

Basic Information
Taxon OID3300020530 Open in IMG/M
Scaffold IDGa0208235_1000590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8053
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063618Metagenome129N
F065741Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0208235_10005903F065741N/AMAITINTEPNDVAPVYSDISYVVTSTNYAQANFKFIAVIKNASGTTIAKLKAPIFHGTTDKGVFNISRILQNYVTYDFTQNLTAISKCNNSYLAYSVEFGEEYGGTEYLNLASDTGKYVWNGLFNLYGSETPDTYKINVTPNSAKFLTRVRPRIVTREQYDYLYFLLLGFNIEPKVIAYNAAGSVIATSYLKLPWTPSTADTSQFMVRFGAGVVQLNALTAGELTSGTPGSVVPVGTAYYTIQFTQTIGGNFSEVYRFDVVEECSKYVPQYLYFLNPLGGFENVRCSMASRDKYSVSRKQFKRNNYTLTGNTFAYDKTKHGMTSYATEKTKQVVLNTNWLNEVEFEWLQDLIASPVVFLGDIPVNITDTNYEVFDYIDGPNNLQITVEYTEPERLQNA
Ga0208235_10005906F063618GGAGGMKLPKNWNEISIAQFQELQLLTEPSFDNQLKTLSILSGKKLDEIEEMRIVDITAALSKLAFMAELPTAKNVGSFRIGNTLYKFAANQHHLQAHQFIMVQDLFAEKDKWVQNLHMIMAALCVPYRIFPPKRKEVKTDDFEKIATQFREKMPISFAYAYTLFFSLCLPELLEATQVYLEQEVEKLKKIADEKTAPPSVG
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