NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208235_1005908

Scaffold Ga0208235_1005908


Overview

Basic Information
Taxon OID3300020530 Open in IMG/M
Scaffold IDGa0208235_1005908 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 22OCT2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1653
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020140Metagenome / Metatranscriptome225Y
F025688Metagenome / Metatranscriptome200Y
F053245Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0208235_10059081F020140N/AMTHKFAIVVDRNFYDKVQNNNDFYLRVLVLDVIRALSDESEAVEKYSTEIFYKCAKSISSEVRMFEDKMSYIFYLEL
Ga0208235_10059083F025688N/AMKFILNVEGANTGGKFLESYAGQEVNIDSLYKDIDINSPPLATLRTSDNRQHSIQLIDIRFINEFIFINCFVIQHDDKHGGKALLRLKPVVNLVKVVNP
Ga0208235_10059084F053245N/AMKLVTIKIGDEDIKDLKEIFKNESDFKPQVRQDMLIVEILRQVLNNPKTEIVEHIDL
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