NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208487_1000678

Scaffold Ga0208487_1000678


Overview

Basic Information
Taxon OID3300020531 Open in IMG/M
Scaffold IDGa0208487_1000678 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7819
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002332Metagenome / Metatranscriptome569Y
F008546Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0208487_10006784F008546N/AMYSIKWWKLLIVFFSAIVLEANSIAGFRFLMNENWMGMVMMAFINPFLCLPMNHYTIEVKKFKERAIIALAFSIGFTVGILTIRPFFI
Ga0208487_10006787F002332N/AMALVNQVQKRVKMPKWDVVKFQILTHCYINRITMSESDLNCLTLLSFNEPIELTNFCLDASAEEDWIFKSPQTVRNCINKAEKNNLVIKDTDNKKLIMLNPNLMIQTKGSILLDYKFLGNDTEEGQ
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