NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208487_1007474

Scaffold Ga0208487_1007474


Overview

Basic Information
Taxon OID3300020531 Open in IMG/M
Scaffold IDGa0208487_1007474 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1501
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009073Metagenome / Metatranscriptome323Y
F024306Metagenome206Y
F048784Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0208487_10074742F009073N/AMKNYQIILTSVLSFFVAITILNGTAQQYVYFAGELNELGCATIALTMGVLSLYAIDWKGFLNYLNK
Ga0208487_10074744F048784N/AMNQYTEKLVSVFSQDELSAMMTAVAGYMNTKRKQGRSTGVEVQAFNKIVDALLVSNYLNAVEVDRVPAGGRMGVAEYKMAEAMELA
Ga0208487_10074745F024306N/AKRANAFLKMFKTESVKINQILSEYPVKMGKFPKKYHSEIKRELTANGFGSVSNYLIIK
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