Basic Information | |
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Taxon OID | 3300020532 Open in IMG/M |
Scaffold ID | Ga0208601_1000221 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 11340 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (9.09%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F042157 | Metagenome | 158 | N |
F044325 | Metagenome | 154 | Y |
F049410 | Metagenome | 146 | N |
F068425 | Metagenome | 124 | Y |
F102493 | Metagenome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208601_100022111 | F044325 | N/A | MKQLIQRLLFGYRNNPAAYIPKGGAKLTYKGGNAEAIHSALVLMQYQIRNAKD |
Ga0208601_10002213 | F068425 | N/A | MGMGAKINNMKTQYQLITFAVLCLLLIIGLNHCAKDNPKPIPFDYKTEAEMIKKQFGIEQAILLNQLENVNRRLQTANNAKDSIRKREISLSNTNIALLKKLRNTLPKECDTVFVLCDEIINVKDSSYAALFTAFQLCDSASTIKDSLIVGYKAENLTDSLLLKVSKQETKQQRKGKIAAWCVGGAMFILWLVVGLK |
Ga0208601_10002214 | F042157 | N/A | MNLKQKYRSPDNRQLKKIADYLIYVLLPFIQTSLALAESQGLISLKQAFWGGLAATFLLINTKFLTKFTTEKPTRTAVIDGDGC |
Ga0208601_10002215 | F049410 | GGA | MTRNTRYTNGKEVITFVKIDFIVIGGRKIDHVYFRRKDKNDLIMPLVEWNIKGKFEWEII |
Ga0208601_10002219 | F102493 | N/A | MTTTLTLTLHFDYENDDRENNIRGGWVLTDITNGKTSVHLSPKLEQLLNEELDPENF |
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