Scaffold Ga0208601_1001108

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208601_1001108

Scaffold Ga0208601_1001108

Overview

Basic Information
Taxon OID	3300020532 Open in IMG/M
Scaffold ID	Ga0208601_1001108 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4335
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005451	Metagenome	400	Y
F037725	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208601_10011082	F037725	AGGAG	MFDDLPLFRLSDPVTSREGAKAVKPRRTSQAMLLLAEYQHKPLTDEEAGMASGLAYKTKCCYWKRCSELRAQGFITDTNTTRMSTAGSAMMVCEITAAGREALR
Ga0208601_10011083	F005451	AGG	VPRKYPYYPAWDGKKTQPVTAKLVDLCNRRWKTTNLGTYVNRQMRGSDNLSVHATGFAADIKYKDEKQAREMWDWFLGKSELGEHSKILGICEIHWYSFGDYGAGYRCSRGEGKAGVKIFTATDNAGPGDGWLHIEVADQTPEAFETAWRSLPKPQKDA

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