NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208601_1006885

Scaffold Ga0208601_1006885


Overview

Basic Information
Taxon OID3300020532 Open in IMG/M
Scaffold IDGa0208601_1006885 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1806
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014714Metagenome / Metatranscriptome260N
F022400Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0208601_10068851F022400N/AMRKIVIESLHKSTLRLVGTGEEKSGPALSPFGPVRAGLITMQKTNKEVQLMELLNSLERKITEANTKSYEVLNIFLHGTTHLVEPTVSFSNETTTD
Ga0208601_10068852F014714GGAGGLELKEPELFDYLKEFHYSDLEKSDEFDTWDCVSLEHKMFIELKSRKTHYPELLIEEMKYQALVEAAGMRSLAPWYINATPEGVWGFDLGKLPQPAWADKWLPNTTEFANKSNRNKLVGFLKVSDGVAL
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