NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208601_1007133

Scaffold Ga0208601_1007133


Overview

Basic Information
Taxon OID3300020532 Open in IMG/M
Scaffold IDGa0208601_1007133 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1772
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F018537Metagenome234Y
F059953Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0208601_10071331F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGRSRQNDVPWRVAQYIDIYLHAANPNRMRIWKKQGMERKNLQLNDTNVMIARTLGSMGYSLADGVKHTKESRPSSPLMAIKELQYQTKMQDPKFQRKEMKRKYMNKSYKLQKGDWGYIAQELLDYTYLCNRVSFTQLKTHYDIVMRGNATT
Ga0208601_10071333F002092N/AMRTTNQKAIEYLKGNPIVANFINKLNIQRKDHYVKADMVSQWKELTVEVGQKYIRLWQGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYSTYGPEYL
Ga0208601_10071334F059953N/AMNLELTLMELNDLYYVVSKGVESHKEFVEIAKRTTPELEKYFDKELSKSIQLLDKIQTVLYNEYQVMDDEPEYDSAGFTEDDRMQEVKSDKKLFTLNNDR
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